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    AGP4 arabinogalactan protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830907, updated on 25-Oct-2024

    Summary

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    Official Symbol
    AGP4
    Official Full Name
    arabinogalactan protein 4
    Primary source
    TAIR:AT5G10430
    Locus tag
    AT5G10430
    See related
    Araport:AT5G10430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arabinogalactan protein 4; ARABINOGALACTAN-PROTEIN 4; ATAGP4; F12B17.220; F12B17_220
    Summary
    Encodes arabinogalactan-protein (AGP4).
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    Genomic context

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    See AGP4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (3277488..3278461, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Histone superfamily protein Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene MATE efflux family protein Neighboring gene uncharacterized protein Neighboring gene cyclin d4;2 Neighboring gene G-box regulating factor 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. JAGGER localization and function are dependent on GPI anchor addition. Figueiredo R, et al. Plant Reprod, 2024 Sep. PMID 38294499, Free PMC Article
    2. "Love Is Strong, and You're so Sweet": JAGGER Is Essential for Persistent Synergid Degeneration and Polytubey Block in Arabidopsis thaliana. Pereira AM, et al. Mol Plant, 2016 Apr 4. PMID 26774620
    3. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    4. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. JAGGER localization and function are dependent on GPI anchor addition.
      Title: JAGGER localization and function are dependent on GPI anchor addition.
    2. Arabinogalactan Protein 4, is an important molecule necessary to prevent the growth of multiple pollen tubes into one embryo sac in Arabidopsis thaliana.
      Title: "Love Is Strong, and You're so Sweet": JAGGER Is Essential for Persistent Synergid Degeneration and Polytubey Block in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_121081.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within synergid death IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan protein 4
    NP_196605.1
    • arabinogalactan protein 4 (AGP4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3277488..3278461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121081.3 → NP_196605.1  arabinogalactan protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196605.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZT16
      UniProtKB/TrEMBL
      A0A178UE88, A0A5S9Y302
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZT16.1

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