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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001040158.2 → NP_001035248.1 core histone macro-H2A.1 isoform 2
See identical proteins and their annotated locations for NP_001035248.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in its coding region, compared to variant 3. This results in a protein (isoform 2) that is a single amino acid shorter than isoform 3. Variants 2 and 4 encode the same isoform (2).
- Source sequence(s)
-
AC026691
- Consensus CDS
-
CCDS4183.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cd02904
Location:177 → 367
- Macro_H2A-like; macrodomain, macroH2A-like family
-
NM_001400401.1 → NP_001387330.1 core histone macro-H2A.1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Consensus CDS
-
CCDS4185.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Related
- ENSP00000424971.1, ENST00000510038.1
-
NM_001400402.1 → NP_001387331.1 core histone macro-H2A.1 isoform 3
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Consensus CDS
-
CCDS4185.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
-
NM_001400403.1 → NP_001387332.1 core histone macro-H2A.1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC026691
- UniProtKB/TrEMBL
-
A0A8I5KS04
-
NM_001400404.1 → NP_001387333.1 core histone macro-H2A.1 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Consensus CDS
-
CCDS93784.1
- UniProtKB/TrEMBL
-
B4DJC3
- Related
- ENSP00000415121.2, ENST00000423969.6
-
NM_004893.3 → NP_004884.1 core histone macro-H2A.1 isoform 2
See identical proteins and their annotated locations for NP_004884.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has a unique 5' UTR and uses an alternate splice site in its coding region, compared to variant 3. This results in a protein (isoform 2) that is a single amino acid shorter than isoform 3. Variants 2 and 4 encode the same isoform (2).
- Source sequence(s)
-
AC026691
- Consensus CDS
-
CCDS4183.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Related
- ENSP00000302572.4, ENST00000304332.8
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cd02904
Location:177 → 367
- Macro_H2A-like; macrodomain, macroH2A-like family
-
NM_138609.3 → NP_613075.1 core histone macro-H2A.1 isoform 1
See identical proteins and their annotated locations for NP_613075.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) has multiple differences in the coding region, compared to variant 3. This results in a shorter protein (isoform 1) with a distinct segment in the middle of its coding region, compared to isoform 3.
- Source sequence(s)
-
AC026691, BC095406
- Consensus CDS
-
CCDS4184.1
- UniProtKB/Swiss-Prot
- O75367, O75377, Q503A8, Q7Z5E3, Q96D41, Q9H8P3, Q9UP96
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Related
- ENSP00000310169.4, ENST00000312469.8
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cd02904
Location:178 → 365
- Macro_H2A-like; macrodomain, macroH2A-like family
-
NM_138610.3 → NP_613258.2 core histone macro-H2A.1 isoform 3
See identical proteins and their annotated locations for NP_613258.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is the longest transcript and encodes the longest isoform (3). Isoform 3, also known as macroH2A1.2, differs from isoform 2 by a single amino acid.
- Source sequence(s)
-
AC026691, AF041483
- Consensus CDS
-
CCDS4185.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Related
- ENSP00000423563.1, ENST00000511689.6
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cd02904
Location:178 → 368
- Macro_H2A-like; macrodomain, macroH2A-like family
RNA
-
NR_174483.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174484.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174485.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174486.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174487.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174488.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174489.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174490.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Related
-
ENST00000687629.1
-
NR_174491.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174492.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174493.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174494.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174495.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174496.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174497.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Related
-
ENST00000688649.1
-
NR_174498.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174499.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174500.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
-
NR_174501.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC026691
- Related
-
ENST00000360597.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
135334381..135399887 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011543730.4 → XP_011542032.1 core histone macro-H2A.1 isoform X1
See identical proteins and their annotated locations for XP_011542032.1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cd02904
Location:177 → 367
- Macro_H2A-like; macrodomain, macroH2A-like family
-
XM_011543735.4 → XP_011542037.1 core histone macro-H2A.1 isoform X5
- UniProtKB/TrEMBL
-
D6RCF2
- Related
-
ENST00000508785.5
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cl00019
Location:177 → 195
- Macro_SF; macrodomain superfamily
-
XM_005272135.5 → XP_005272192.1 core histone macro-H2A.1 isoform X3
- UniProtKB/TrEMBL
-
D6RCF2
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cl00019
Location:177 → 195
- Macro_SF; macrodomain superfamily
-
XM_011543734.4 → XP_011542036.1 core histone macro-H2A.1 isoform X4
See identical proteins and their annotated locations for XP_011542036.1
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cl00019
Location:178 → 196
- Macro_SF; macrodomain superfamily
-
XM_005272134.5 → XP_005272191.1 core histone macro-H2A.1 isoform X2
See identical proteins and their annotated locations for XP_005272191.1
- UniProtKB/TrEMBL
-
A0A994J4J7
- Related
- ENSP00000515857.1, ENST00000513210.6
- Conserved Domains (2) summary
-
- cd00074
Location:5 → 117
- H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...
- cl00019
Location:178 → 196
- Macro_SF; macrodomain superfamily
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
135861569..135927059 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054353833.1 → XP_054209808.1 core histone macro-H2A.1 isoform X1
- UniProtKB/TrEMBL
-
A0A8I5KRC6
-
XM_054353837.1 → XP_054209812.1 core histone macro-H2A.1 isoform X5
- UniProtKB/TrEMBL
-
D6RCF2
-
XM_054353836.1 → XP_054209811.1 core histone macro-H2A.1 isoform X4
-
XM_054353835.1 → XP_054209810.1 core histone macro-H2A.1 isoform X3
- UniProtKB/TrEMBL
-
D6RCF2
-
XM_054353834.1 → XP_054209809.1 core histone macro-H2A.1 isoform X2
- UniProtKB/TrEMBL
-
A0A994J4J7