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    LINC02607 long intergenic non-protein coding RNA 2607 [ Homo sapiens (human) ]

    Gene ID: 100996635, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02607provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2607provided by HGNC
    Primary source
    HGNC:HGNC:54049
    See related
    Ensembl:ENSG00000228971 AllianceGenome:HGNC:54049
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward brain (RPKM 5.2) See more
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    Genomic context

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    See LINC02607 in Genome Data Viewer
    Location:
    1p21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (95510116..95515464)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (95358159..95363508)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (95975672..95981020)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985420 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:95873423-95874034 Neighboring gene NANOG hESC enhancer GRCh37_chr1:95903681-95904235 Neighboring gene long intergenic non-protein coding RNA 1761 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:95983694-95984619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96048206-96048858 Neighboring gene uncharacterized LOC101928219 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96134923-96135424 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:96135425-96135924 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:96207937-96209136 Neighboring gene uncharacterized LOC124904592 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96468667-96469209 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:96469210-96469751 Neighboring gene long intergenic non-protein coding RNA 2790

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110621.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL356479, BC067883
      Related
      ENST00000411798.2

    2. NR_110622.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and is shorter compared to variant 1.
      Source sequence(s)
      AL356479, BC045746, HY120625
      Related
      ENST00000653589.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      95510116..95515464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      95358159..95363508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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