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    LOC105369819 uncharacterized LOC105369819 [ Homo sapiens (human) ]

    Gene ID: 105369819, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC105369819
    Gene description
    uncharacterized LOC105369819
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.1), lymph node (RPKM 0.4) and 8 other tissues See more
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    Genomic context

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    See LOC105369819 in Genome Data Viewer
    Location:
    12q15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (68332631..68337188)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (68313211..68316739)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene interleukin 22 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4645 Neighboring gene Mdm1 nuclear protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6634 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4646 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:68752044-68752555 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68758482-68759004 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68759005-68759526 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6636 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:68795808-68797007 Neighboring gene long intergenic non-protein coding RNA 2384 Neighboring gene Sharpr-MPRA regulatory region 8569 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6637 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6638 Neighboring gene proteasome 26S subunit, ATPase, 6 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      68332631..68337188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_945057.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      68313211..68316739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007083452.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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