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    ALG1L9P ALG1 like 9, pseudogene [ Homo sapiens (human) ]

    Gene ID: 285407, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ALG1L9Pprovided by HGNC
    Official Full Name
    ALG1 like 9, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:44378
    See related
    Ensembl:ENSG00000293546 AllianceGenome:HGNC:44378
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See ALG1L9P in Genome Data Viewer
    Location:
    11q13.4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (71794363..71813859, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (71721277..71740780, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (71505409..71524905, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak1333 silencer Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 14 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:71445659-71446532 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8 Neighboring gene XNDC1N-ZNF705EP-ALG1L9P readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3711 Neighboring gene family with sequence similarity 86, member C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3712 Neighboring gene zinc finger protein 705E, pseudogene Neighboring gene defensin beta 108B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • asparagine-linked glycosylation 1 homolog pseudogene
    • asparagine-linked glycosylation 1-like 9, pseudogene
    • beta-1,4-mannosyltransferase pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_073386.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an exon and contains an alternate 3' exon, compared to variant 1.
      Source sequence(s)
      AP002495, BC073927
      Related
      ENST00000511954.5

    2. NR_073387.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks three exons and contains an alternate 3' exon, compared to variant 1.
      Source sequence(s)
      AP002495, BC054093
      Related
      ENST00000508969.2

    3. NR_073388.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript.
      Source sequence(s)
      AP002495, R18473

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      71794363..71813859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      71721277..71740780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_008786.1: Suppressed sequence

      Description
      NG_008786.1: This RefSeq was permanently suppressed because it is now thought that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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