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    C8h11orf87 similar to human chromosome 11 open reading frame 87 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100125362, updated on 27-Nov-2024

    Summary

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    Official Symbol
    C8h11orf87provided by RGD
    Official Full Name
    similar to human chromosome 11 open reading frame 87provided by RGD
    Primary source
    RGD:1642426
    See related
    EnsemblRapid:ENSRNOG00000025463 AllianceGenome:RGD:1642426
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human C11orf87 (chromosome 11 open reading frame 87). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 153.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C8h11orf87 in Genome Data Viewer
    Location:
    8q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (61958626..61966119, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (53062361..53069882, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (57248620..57255599, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094156 Neighboring gene basic transcription factor 3, pseudogene 12 Neighboring gene uncharacterized LOC134480052 Neighboring gene uncharacterized LOC102551665 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC109299

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C11orf87 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103354.2 → NP_001096824.1  uncharacterized protein C11orf87 homolog precursor

      See identical proteins and their annotated locations for NP_001096824.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/Swiss-Prot
      Q569A3
      UniProtKB/TrEMBL
      A6J4I6
      Conserved Domains (1) summary
      pfam06365
      Location:55 → 99
      CD34_antigen; CD34/Podocalyxin family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      61958626..61966119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017595396.3 → XP_017450885.1  uncharacterized protein C11orf87 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q569A3
      UniProtKB/TrEMBL
      A6J4I6
      Related
      ENSRNOP00000062036.1, ENSRNOT00000028972.5
      Conserved Domains (1) summary
      pfam06365
      Location:55 → 99
      CD34_antigen; CD34/Podocalyxin family

    2. XM_008766199.4 → XP_008764421.1  uncharacterized protein C11orf87 homolog isoform X1

      See identical proteins and their annotated locations for XP_008764421.1

      UniProtKB/Swiss-Prot
      Q569A3
      UniProtKB/TrEMBL
      A6J4I6
      Conserved Domains (1) summary
      pfam06365
      Location:55 → 99
      CD34_antigen; CD34/Podocalyxin family

    3. XM_006243064.5 → XP_006243126.1  uncharacterized protein C11orf87 homolog isoform X1

      See identical proteins and their annotated locations for XP_006243126.1

      UniProtKB/Swiss-Prot
      Q569A3
      UniProtKB/TrEMBL
      A6J4I6
      Related
      ENSRNOP00000094101.1, ENSRNOT00000114873.2
      Conserved Domains (1) summary
      pfam06365
      Location:55 → 99
      CD34_antigen; CD34/Podocalyxin family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q569A3.1 GenPept UniProtKB/Swiss-Prot:Q569A3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.