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    Clca4c-ps chloride channel accessory 4C, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 622139, updated on 22-Oct-2024

    Summary

    Official Symbol
    Clca4c-psprovided by MGI
    Official Full Name
    chloride channel accessory 4C, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:3643218
    See related
    Ensembl:ENSMUSG00000121400 AllianceGenome:MGI:3643218
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Clca4c; Gm6289; Gm18718; EG622139
    Expression
    Biased expression in large intestine adult (RPKM 1.0), colon adult (RPKM 0.2) and 1 other tissue See more
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    Genomic context

    See Clca4c-ps in Genome Data Viewer
    Location:
    3 H2; 3 69.18 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (144585083..144601772, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (144879322..144896011, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene chloride channel accessory 3B Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 pseudogene Neighboring gene predicted gene, 57838 Neighboring gene chloride channel accessory 4B Neighboring gene STARR-seq mESC enhancer starr_09186 Neighboring gene chloride channel accessory 4A Neighboring gene predicted gene, 35066

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Other Names

    • chloride channel calcium activated 4A pseudogene
    • chloride channel calcium activated 4C, pseudogene
    • chloride channel calcium activated 6 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126537.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK139132, BB750818
      Related
      ENSMUST00000098551.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      144585083..144601772 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039222.1: Suppressed sequence

      Description
      NM_001039222.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.