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    2600014E21Rik RIKEN cDNA 2600014E21 gene [ Mus musculus (house mouse) ]

    Gene ID: 102635707, updated on 17-Aug-2024

    Summary

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    Official Symbol
    2600014E21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2600014E21 geneprovided by MGI
    Primary source
    MGI:MGI:1919384
    See related
    AllianceGenome:MGI:1919384
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13659; Gm38714
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 2600014E21Rik in Genome Data Viewer
    Location:
    2 C3; 2 44.61 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (74967999..75152751)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75137655..75322407)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S8 pseudogene Neighboring gene STARR-seq mESC enhancer starr_04858 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:74857649-74857758 Neighboring gene STARR-seq mESC enhancer starr_04859 Neighboring gene STARR-seq mESC enhancer starr_04860 Neighboring gene STARR-seq mESC enhancer starr_04861 Neighboring gene predicted gene, 46748 Neighboring gene predicted gene 13652 Neighboring gene ribosomal protein S6, pseudogene 4 Neighboring gene predicted gene 13653 Neighboring gene STARR-seq mESC enhancer starr_04862 Neighboring gene predicted gene, 34401 Neighboring gene STARR-positive B cell enhancer mm9_chr2:75150393-75150694 Neighboring gene predicted gene, 39857 Neighboring gene fucosidase, alpha-L- 1, tissue pseudogene Neighboring gene predicted gene, 32927 Neighboring gene predicted gene, 39856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes. Rodríguez-Carballo E, et al. Genes Dev, 2017 Nov 15. PMID 29273679, Free PMC Article
    2. Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding. Delpretti S, et al. Cell Rep, 2013 Oct 17. PMID 24075990
    3. Telencephalic embryonic subtractive sequences: a unique collection of neurodevelopmental genes. Bulfone A, et al. J Neurosci, 2005 Aug 17. PMID 16107646, Free PMC Article
    4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      74967999..75152751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004941124.1 RNA Sequence

    2. XR_001783338.2 RNA Sequence

    3. XR_001783353.2 RNA Sequence

    4. XR_001783345.2 RNA Sequence

    5. XR_001783352.2 RNA Sequence

    6. XR_001783365.2 RNA Sequence

    7. XR_001783356.2 RNA Sequence

    8. XR_001783367.2 RNA Sequence

    9. XR_001783354.2 RNA Sequence

    10. XR_001783343.2 RNA Sequence

    11. XR_001783336.3 RNA Sequence

    12. XR_001783341.3 RNA Sequence

    13. XR_001783337.3 RNA Sequence

    14. XR_001783342.3 RNA Sequence

    15. XR_001783348.3 RNA Sequence

    16. XR_001783346.3 RNA Sequence

    17. XR_001783349.2 RNA Sequence

    18. XR_001783351.2 RNA Sequence

    19. XR_001783350.2 RNA Sequence

    20. XR_001783369.3 RNA Sequence

    21. XR_001783355.2 RNA Sequence

    22. XR_001783361.2 RNA Sequence

    23. XR_001783344.2 RNA Sequence

    24. XR_001783339.3 RNA Sequence

    25. XR_001783340.3 RNA Sequence

    26. XR_001783347.2 RNA Sequence

    27. XR_001783363.3 RNA Sequence

    28. XR_001783357.3 RNA Sequence

    29. XR_001783368.3 RNA Sequence

    30. XR_001783358.3 RNA Sequence

    31. XR_001783359.3 RNA Sequence

    32. XR_001783370.3 RNA Sequence

    33. XR_001783372.3 RNA Sequence

    34. XR_001783360.2 RNA Sequence

    35. XR_001783362.2 RNA Sequence

    36. XR_866464.3 RNA Sequence

    37. XR_001783364.2 RNA Sequence

    38. XR_001783371.2 RNA Sequence

    39. XR_001783373.2 RNA Sequence

    40. XR_003953856.2 RNA Sequence

    41. XR_866463.1 RNA Sequence

    42. XR_004941123.1 RNA Sequence

    43. XR_001783366.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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