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    l(3)07882 lethal (3) 07882 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 46201, updated on 27-Dec-2024

    Summary

    Official Symbol
    l(3)07882provided by FlyBase
    Official Full Name
    lethal (3) 07882provided by FlyBase
    Primary source
    FLYBASE:FBgn0010926
    Locus tag
    Dmel_CG5824
    See related
    AllianceGenome:FB:FBgn0010926
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG5824; Dmel\CG5824
    Summary
    Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including anal pad primordium; anterior endoderm; embryonic/larval midgut primordium; gut section; and somatic trunk mesoderm derivative. Orthologous to human NOP14 (NOP14 nucleolar protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See l(3)07882 in Genome Data Viewer
    Location:
    90B3-90B4; 3-61 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (17535533..17539963, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (13362654..13365685, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44349 Neighboring gene uncharacterized protein Neighboring gene Pyrroline-5-carboxylate reductase-like 2 Neighboring gene Splicing factor 1 Neighboring gene Peroxiredoxin 3

    Genomic regions, transcripts, and products

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables snoRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in rRNA processing ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ribosomal small subunit biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    part_of Noc4p-Nop14p complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lethal (3) 07882
    Names
    CG5824-PA
    CG5824-PB
    l(3)07882-PA
    l(3)07882-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      17535533..17539963 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001316506.1NP_001303435.1  lethal (3) 07882, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VEJ2
      UniProtKB/TrEMBL
      A0A126GUW2
      Conserved Domains (1) summary
      pfam04147
      Location:30839
      Nop14; Nop14-like family
    2. NM_143783.3NP_652040.2  lethal (3) 07882, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_652040.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9VEJ2
      UniProtKB/TrEMBL
      A0A126GUW2
      Related
      FBpp0082928
      Conserved Domains (1) summary
      pfam04147
      Location:30839
      Nop14; Nop14-like family