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    CG42288 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 36559, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42288provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0259184
    Locus tag
    Dmel_CG42288
    See related
    AllianceGenome:FB:FBgn0259184
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13353; Dmel\CG42288
    Old locus tag
    Dmel_CG13353
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
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    Genomic context

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    See CG42288 in Genome Data Viewer
    Location:
    50D5-50D5; 2-68 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14091031..14091814)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (9978536..9979319)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene mastermind Neighboring gene uncharacterized protein Neighboring gene prosap Neighboring gene uncharacterized protein Neighboring gene mir-989 stem loop Neighboring gene Reduction in Cnn dots 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Presynaptic Function of Shank Protein in Drosophila. Wu S, et al. J Neurosci, 2017 Nov 29. PMID 29074576, Free PMC Article
    2. Pasiflora proteins are novel core components of the septate junction. Deligiannaki M, et al. Development, 2015 Sep 1. PMID 26329602, Free PMC Article
    3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
    4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
    5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42288-PA
    CG42288-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      14091031..14091814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137082.3 → NP_610926.2  uncharacterized protein Dmel_CG42288, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_610926.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z9K9, C9QNX9

    2. NM_001259387.1 → NP_001246316.1  uncharacterized protein Dmel_CG42288, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246316.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4K721, C9QNX9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4K721 A0A0B4K721
    A1Z9K9 A1Z9K9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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