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    Tsp29Fa Tetraspanin 29Fa [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34211, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tsp29Faprovided by FlyBase
    Official Full Name
    Tetraspanin 29Faprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032074
    Locus tag
    Dmel_CG9494
    See related
    AllianceGenome:FB:FBgn0032074
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG9494; Dm.Tsp29Fa; Dmel\CG9494
    Summary
    Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adult head; embryonic midgut chamber; and embryonic/larval midgut. Orthologous to human CD63 (CD63 molecule). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Tsp29Fa in Genome Data Viewer
    Location:
    29F4-29F4; 2-34 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8933962..8936096)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8933962..8936096)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR46071 Neighboring gene Tetraspanin 29Fb Neighboring gene Argininosuccinate lyase Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GATAe-dependent and -independent expressions of genes in the differentiated endodermal midgut of Drosophila. Okumura T, et al. Gene Expr Patterns, 2007 Jan. PMID 16914392
    2. GATA factors participate in tissue-specific immune responses in Drosophila larvae. Senger K, et al. Proc Natl Acad Sci U S A, 2006 Oct 24. PMID 17032752, Free PMC Article
    3. GATA factor genes in the Drosophila midgut embryo. Hernández de Madrid B, et al. PLoS One, 2018. PMID 29518114, Free PMC Article
    4. Neighbourhood continuity is not required for correct testis gene expression in Drosophila. Meadows LA, et al. PLoS Biol, 2010 Nov 30. PMID 21151342, Free PMC Article
    5. Systematic assessment of transcriptomic and metabolic reprogramming by blue light exposure coupled with aging. Huang J, et al. PNAS Nexus, 2023 Dec. PMID 38059264, Free PMC Article

    See all (29) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    tetraspanin 29Fa
    Names
    CG9494-PA
    CG9494-PB
    CG9494-PC
    Tsp29Fa-PA
    Tsp29Fa-PB
    Tsp29Fa-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      8933962..8936096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001169444.2 → NP_001162915.1  tetraspanin 29Fa, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001162915.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NB17, Q9VLH1
      Conserved Domains (2) summary
      cd03127
      Location:106 → 210
      tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
      pfam00335
      Location:11 → 238
      Tetraspannin; Tetraspanin family

    2. NM_078791.3 → NP_523515.1  tetraspanin 29Fa, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_523515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NB17, Q9VLH1
      Related
      FBpp0079355
      Conserved Domains (2) summary
      cd03127
      Location:106 → 210
      tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
      pfam00335
      Location:11 → 238
      Tetraspannin; Tetraspanin family

    3. NM_001298838.1 → NP_001285767.1  tetraspanin 29Fa, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285767.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9NB17, Q9VLH1
      Conserved Domains (2) summary
      cd03127
      Location:106 → 210
      tetraspanin_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the ...
      pfam00335
      Location:11 → 238
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VLH1 Q9VLH1

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