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    mrpl3 mitochondrial ribosomal protein L3 [ Danio rerio (zebrafish) ]

    Gene ID: 336283, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mrpl3provided by ZNC
    Official Full Name
    mitochondrial ribosomal protein L3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8227
    See related
    Ensembl:ENSDARG00000103318 AllianceGenome:ZFIN:ZDB-GENE-030131-8227
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj61d01; zgc:66423; wu:fj61d01
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 9. Orthologous to human MRPL3 (mitochondrial ribosomal protein L3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mrpl3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19193893..19217289)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19620901..19644336)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene dynein, cytoplasmic 1, light intermediate chain 1 Neighboring gene copine IVb Neighboring gene uncharacterized LOC110438147 Neighboring gene uncharacterized LOC137488503 Neighboring gene protein tyrosine phosphatase, non-receptor type 23, b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL3m

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200007.1 → NP_956301.1  large ribosomal subunit protein uL3m

      See identical proteins and their annotated locations for NP_956301.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055650
      UniProtKB/TrEMBL
      Q7SXD6
      Conserved Domains (1) summary
      PRK00001
      Location:70 → 278
      rplC; 50S ribosomal protein L3; Validated

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      19193893..19217289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159511.3 → XP_005159568.1  large ribosomal subunit protein uL3m isoform X1

      UniProtKB/TrEMBL
      A0A0R4IY00, A0A8M2B6E9
      Related
      ENSDARP00000141505.1, ENSDART00000161570.2
      Conserved Domains (1) summary
      PRK00001
      Location:96 → 304
      rplC; 50S ribosomal protein L3; Validated
    Nucleotide Protein
    Heading Accession and Version

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