hmgn6 high mobility group nucleosome binding domain 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hmgn6provided by ZNC
Official Full Name: high mobility group nucleosome binding domain 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1005
See related: Ensembl:ENSDARG00000087636 AllianceGenome:ZFIN:ZDB-GENE-030131-1005
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb06f03; fb55f05; wu:fb55f05; si:dkeyp-86f7.3
Summary: Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human HMGN1 (high mobility group nucleosome binding domain 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 14

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (9421771..9428248)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (9115757..9122234)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chromatin organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in chromatin	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: high mobility group nucleosome binding domain 6

Names: high-mobility group nucleosome binding domain 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001161336.1 → NP_001154808.1 high mobility group nucleosome binding domain 6

Status: VALIDATED

Source sequence(s)

CR293501

UniProtKB/TrEMBL

A0A8M1NRJ4, E7FFT5

Related

ENSDARP00000105574.2, ENSDART00000123652.3

Conserved Domains (1) summary

smart00527
Location:2 → 83

HMG17; domain in high mobilty group proteins HMG14 and HMG 17