U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    txndc9 thioredoxin domain containing 9 [ Danio rerio (zebrafish) ]

    Gene ID: 336625, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    txndc9provided by ZNC
    Official Full Name
    thioredoxin domain containing 9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8569
    See related
    Ensembl:ENSDARG00000069853 AllianceGenome:ZFIN:ZDB-GENE-030131-8569
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb15e07; zgc:55522; wu:fb15e07
    Summary
    Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human TXNDC9 (thioredoxin domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See txndc9 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21819136..21824647)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (22008267..22013778)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191313 Neighboring gene SRY-box transcription factor 1a Neighboring gene REV1 DNA directed polymerase Neighboring gene zgc:162944 Neighboring gene mitochondrial ribosomal protein L30

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    thioredoxin domain-containing protein 9
    Names
    ATP binding protein associated with cell differentiation

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328575.1 → NP_001315504.1  thioredoxin domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      CR536604, EH491524
      UniProtKB/TrEMBL
      A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
      Related
      ENSDARP00000092767.4, ENSDART00000101991.4
      Conserved Domains (2) summary
      cd02989
      Location:67 → 179
      Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
      pfam12137
      Location:1 → 58
      RapA_C; RNA polymerase recycling family C-terminal

    2. NM_001328576.1 → NP_001315505.1  thioredoxin domain-containing protein 9

      Status: VALIDATED

      Source sequence(s)
      CR536604, EH491524
      UniProtKB/TrEMBL
      A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
      Related
      ENSDARP00000121759.1, ENSDART00000146850.2
      Conserved Domains (2) summary
      cd02989
      Location:67 → 179
      Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
      pfam12137
      Location:1 → 58
      RapA_C; RNA polymerase recycling family C-terminal

    3. NM_200021.2 → NP_956315.1  thioredoxin domain-containing protein 9

      See identical proteins and their annotated locations for NP_956315.1

      Status: VALIDATED

      Source sequence(s)
      CR536604, EH491524
      UniProtKB/TrEMBL
      A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
      Related
      ENSDARP00000121195.1, ENSDART00000136902.3
      Conserved Domains (2) summary
      cd02989
      Location:67 → 179
      Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
      pfam12137
      Location:1 → 58
      RapA_C; RNA polymerase recycling family C-terminal

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      21819136..21824647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395278.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      188132..193637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.