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    cep350 centrosomal protein 350 [ Danio rerio (zebrafish) ]

    Gene ID: 100004437, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cep350provided by ZNC
    Official Full Name
    centrosomal protein 350provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6975
    See related
    Ensembl:ENSDARG00000058000 AllianceGenome:ZFIN:ZDB-GENE-030131-6975
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fa12b05; wu:fa12b05; si:dkey-39n1.3
    Summary
    Predicted to enable microtubule binding activity. Predicted to act upstream of or within microtubule anchoring. Predicted to be located in centrosome. Orthologous to human CEP350 (centrosomal protein 350). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See cep350 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (14559385..14609281, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (14521678..14571577, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene LIM homeobox 4 Neighboring gene quiescin Q6 sulfhydryl oxidase 1 Neighboring gene uncharacterized LOC137496331 Neighboring gene calcium voltage-gated channel subunit alpha1 E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. An intestinal cell type in zebrafish is the nexus for the SARS-CoV-2 receptor and the Renin-Angiotensin-Aldosterone System that contributes to COVID-19 comorbidities. Postlethwait JH, et al. bioRxiv, 2020 Sep 2. PMID 32908984, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microtubule anchoring IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    centrosome-associated protein 350

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      14559385..14609281 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223109.1 → XP_068079210.1  centrosome-associated protein 350 isoform X2

      UniProtKB/TrEMBL
      A0A0R4I9E0, A0A8M3AV07
      Related
      ENSDARP00000084687.5, ENSDART00000090254.7

    2. XM_068223112.1 → XP_068079213.1  centrosome-associated protein 350 isoform X5

      UniProtKB/TrEMBL
      A0A8M9Q9Z4

    3. XM_068223114.1 → XP_068079215.1  centrosome-associated protein 350 isoform X7

      UniProtKB/TrEMBL
      A0A8M1PZQ2

    4. XM_068223110.1 → XP_068079211.1  centrosome-associated protein 350 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BEE4

    5. XM_068223111.1 → XP_068079212.1  centrosome-associated protein 350 isoform X4

      UniProtKB/TrEMBL
      A0A8M2BEF1

    6. XM_068223113.1 → XP_068079214.1  centrosome-associated protein 350 isoform X6

      UniProtKB/TrEMBL
      A0A8M6Z290
      Related
      ENSDARP00000113715.2, ENSDART00000146175.4

    7. XM_068223108.1 → XP_068079209.1  centrosome-associated protein 350 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BED4
    Nucleotide Protein Strain
    Heading Accession and Version

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