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    ubl3a ubiquitin-like 3a [ Danio rerio (zebrafish) ]

    Gene ID: 324710, updated on 9-Dec-2024

    Summary

    Official Symbol
    ubl3aprovided by ZNC
    Official Full Name
    ubiquitin-like 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3431
    See related
    Ensembl:ENSDARG00000099532 AllianceGenome:ZFIN:ZDB-GENE-030131-3431
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc38h07; zgc:77101; wu:fc38h07
    Summary
    Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See ubl3a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (36363313..36406391, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (36419555..36462677, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene odorant receptor, family 30, subfamily BU, member 2 Neighboring gene odorant receptor, family 30, subfamily BU, member 1 Neighboring gene ubiquitin specific peptidase like 1 Neighboring gene arachidonate 5-lipoxygenase-activating protein Neighboring gene mesenteric estrogen dependent adipogenesis

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212686.2NP_997851.1  ubiquitin-like protein 3a

      See identical proteins and their annotated locations for NP_997851.1

      Status: VALIDATED

      Source sequence(s)
      AL929494, BX088524, BX548163, DT071832
      UniProtKB/TrEMBL
      A0A8N7V0A2, Q6NY69
      Related
      ENSDARP00000132683.1, ENSDART00000160468.2
      Conserved Domains (2) summary
      smart00213
      Location:1088
      UBQ; Ubiquitin homologues
      pfam13881
      Location:8114
      Rad60-SLD_2; Ubiquitin-2 like Rad60 SUMO-like

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      36363313..36406391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394795.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      234441..281602 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395292.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      246491..248112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)