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    si:dkey-225f5.4 si:dkey-225f5.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100000219, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-225f5.4provided by ZNC
    Official Full Name
    si:dkey-225f5.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-305
    See related
    Ensembl:ENSDARG00000101975 AllianceGenome:ZFIN:ZDB-GENE-030131-305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb21f05; wu:fb21f05; si: dkey-225f5.4
    Summary
    Predicted to be located in kinetochore. Orthologous to human ZWINT (ZW10 interacting kinetochore protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-225f5.4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (23499246..23513111, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (23368698..23382645, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex class I LCA Neighboring gene nuclear receptor subfamily 1, group d, member 1 Neighboring gene insulin-like growth factor 2 mRNA binding protein 1 Neighboring gene ubiquitin-conjugating enzyme E2Z

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in kinetochore IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ZW10 interactor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      23499246..23513111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001340431.9 → XP_001340467.2  ZW10 interactor isoform X2

      UniProtKB/TrEMBL
      A0A0G2L5W1, A0A8M1PZE9
      Related
      ENSDARP00000140159.1, ENSDART00000170200.2
      Conserved Domains (1) summary
      pfam15556
      Location:27 → 190
      Zwint; ZW10 interactor

    2. XM_017354754.3 → XP_017210243.1  ZW10 interactor isoform X1

      UniProtKB/TrEMBL
      A0A8M6YXM6
    Nucleotide Protein
    Heading Accession and Version

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