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    hsf2bp heat shock transcription factor 2 binding protein [ Danio rerio (zebrafish) ]

    Gene ID: 565831, updated on 9-Dec-2024

    Summary

    Official Symbol
    hsf2bpprovided by ZNC
    Official Full Name
    heat shock transcription factor 2 binding proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1458
    See related
    Ensembl:ENSDARG00000035080 AllianceGenome:ZFIN:ZDB-GENE-030131-1458
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb72c09; wu:fb72c09; si:ch211-237a6.7
    Summary
    Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 19. Orthologous to human HSF2BP (heat shock transcription factor 2 binding protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See hsf2bp in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (29101803..29141097, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (28306997..28335318, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene cystathionine beta-synthase a Neighboring gene crystallin, alpha A Neighboring gene ankyrin repeat domain 10a Neighboring gene zgc:173948 Neighboring gene cysteinyl-tRNA synthetase 2, mitochondrial

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    heat shock factor 2-binding protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386638.1NP_001373567.1  heat shock factor 2-binding protein

      Status: VALIDATED

      Source sequence(s)
      BX248514
      UniProtKB/TrEMBL
      A0A8M6YYV8, A0A8M9QDB2
      Related
      ENSDARP00000070028.4, ENSDART00000075546.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      29101803..29141097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068220433.1XP_068076534.1  heat shock factor 2-binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8M6YYV8
      Related
      ENSDARP00000114662.1, ENSDART00000133246.3

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394488.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      194363..227513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)