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    si:ch1073-340i21.3 si:ch1073-340i21.3 [ Danio rerio (zebrafish) ]

    Gene ID: 570991, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:ch1073-340i21.3provided by ZNC
    Official Full Name
    si:ch1073-340i21.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-199
    See related
    Ensembl:ENSDARG00000088885 AllianceGenome:ZFIN:ZDB-GENE-030131-199
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb16f09; wu:fb16f09
    Orthologs
    all
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    Genomic context

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    See si:ch1073-340i21.3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (46329939..46336387)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (46114992..46121440)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein DDB_G0272718-like Neighboring gene uncharacterized LOC137487795 Neighboring gene proline-rich protein 13 Neighboring gene si:ch1073-340i21.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines. Lam SH, et al. BMC Med Genomics, 2011 May 16. PMID 21575170, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC570991

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305575.1 → NP_001292504.1  uncharacterized protein LOC570991

      Status: VALIDATED

      Source sequence(s)
      CU914813, EH455883
      UniProtKB/TrEMBL
      A0A8M1P1B7, E7F969
      Related
      ENSDARP00000110427.1, ENSDART00000128404.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      46329939..46336387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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