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    taldo1 transaldolase 1 [ Danio rerio (zebrafish) ]

    Gene ID: 324556, updated on 9-Dec-2024

    Summary

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    Official Symbol
    taldo1provided by ZNC
    Official Full Name
    transaldolase 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3277
    See related
    Ensembl:ENSDARG00000103369 AllianceGenome:ZFIN:ZDB-GENE-030131-3277
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Tal; zgc:66054; wu:fc32g02
    Summary
    Predicted to enable transaldolase activity. Predicted to be involved in pentose-phosphate shunt, non-oxidative branch. Predicted to act upstream of or within carbohydrate metabolic process and pentose-phosphate shunt. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in carbohydrate metabolic disorder. Orthologous to human TALDO1 (transaldolase 1). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See taldo1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (50776126..50799457, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (50836102..50870281)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene RAP2B, member of RAS oncogene family Neighboring gene zgc:158464 Neighboring gene reelin-like Neighboring gene reelin-like Neighboring gene tetraspanin 4a Neighboring gene uncharacterized LOC137488356 Neighboring gene uncharacterized LOC137488355

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Conservation of the Nrf2-Mediated Gene Regulation of Proteasome Subunits and Glucose Metabolism in Zebrafish. Nguyen VT, et al. Oxid Med Cell Longev, 2016. PMID 28116036, Free PMC Article
    2. Dichlorvos exposure results in large scale disruption of energy metabolism in the liver of the zebrafish, Danio rerio. Bui-Nguyen TM, et al. BMC Genomics, 2015 Oct 24. PMID 26499117, Free PMC Article
    3. Transcriptome kinetics of arsenic-induced adaptive response in zebrafish liver. Lam SH, et al. Physiol Genomics, 2006 Nov 27. PMID 16882884
    4. Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones. Kolmakov NN, et al. BMC Genomics, 2008 Sep 20. PMID 18803863, Free PMC Article
    5. Transcriptional and metabolic effects of glucocorticoid receptor α and β signaling in zebrafish. Chatzopoulou A, et al. Endocrinology, 2015 May. PMID 25756310

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC56232

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables transaldolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transaldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pentose-phosphate shunt, non-oxidative branch IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transaldolase
    NP_955981.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199687.1 → NP_955981.1  transaldolase

      See identical proteins and their annotated locations for NP_955981.1

      Status: PROVISIONAL

      Source sequence(s)
      BC061957
      UniProtKB/TrEMBL
      Q6P6Y0
      Related
      ENSDARP00000143071.2, ENSDART00000174373.2
      Conserved Domains (2) summary
      PRK05269
      Location:11 → 329
      PRK05269; transaldolase B; Provisional
      PTZ00411
      Location:11 → 330
      PTZ00411; transaldolase-like protein; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      50776126..50799457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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