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    cryba4 crystallin, beta A4 [ Danio rerio (zebrafish) ]

    Gene ID: 553178, updated on 9-Dec-2024

    Summary

    Official Symbol
    cryba4provided by ZNC
    Official Full Name
    crystallin, beta A4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-143
    See related
    Ensembl:ENSDARG00000024548 AllianceGenome:ZFIN:ZDB-GENE-050522-143
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:109979
    Summary
    Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract 23. Orthologous to human CRYBA4 (crystallin beta A4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See cryba4 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (44042227..44051466)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (44195374..44204669)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA dehydrogenase short chain Neighboring gene crystallin, beta B1 Neighboring gene G protein-coupled receptor kinase 3 Neighboring gene unconventional myosin-XVIIIb-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of eye lens IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in lens development in camera-type eye IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in visual perception IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001018125.1NP_001018135.1  beta-crystallin A4

      See identical proteins and their annotated locations for NP_001018135.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095102
      UniProtKB/TrEMBL
      A0A2R8QSC7, A0A8N7XJD7, F1R761, Q52JI7
      Related
      ENSDARP00000046171.7, ENSDART00000046172.9
      Conserved Domains (2) summary
      smart00247
      Location:106194
      XTALbg; Beta/gamma crystallins
      pfam00030
      Location:1397
      Crystall; Beta/Gamma crystallin

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      44042227..44051466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009305688.4XP_009303963.1  beta-crystallin A4 isoform X1

      See identical proteins and their annotated locations for XP_009303963.1

      UniProtKB/TrEMBL
      A0A2R8QSC7, A0A8N7XJD7, F1R761, Q52JI7
      Related
      ENSDARP00000156225.1, ENSDART00000190006.1
      Conserved Domains (2) summary
      smart00247
      Location:106194
      XTALbg; Beta/gamma crystallins
      pfam00030
      Location:1397
      Crystall; Beta/Gamma crystallin