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    dnajc17 DnaJ (Hsp40) homolog, subfamily C, member 17 [ Danio rerio (zebrafish) ]

    Gene ID: 393216, updated on 9-Dec-2024

    Summary

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    Official Symbol
    dnajc17provided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 17provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-894
    See related
    Ensembl:ENSDARG00000104959 AllianceGenome:ZFIN:ZDB-GENE-040426-894
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56091
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to be part of spliceosomal complex. Orthologous to human DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See dnajc17 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (1074539..1175056, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (839008..971005, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 1, subfamily C, polypeptide 2 Neighboring gene cdc42 effector protein 3-like Neighboring gene GTP cyclohydrolase I feedback regulator Neighboring gene inverted formin 2 Neighboring gene adenylosuccinate synthase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility. Lee HJ, et al. Genome Biol, 2020 Feb 27. PMID 32106888, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC56091

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal complex disassembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    dnaJ homolog subfamily C member 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200246.2 → NP_956540.2  dnaJ homolog subfamily C member 17

      Status: VALIDATED

      Source sequence(s)
      CT583717
      UniProtKB/TrEMBL
      Q7ZUU4
      Related
      ENSDARP00000135201.2, ENSDART00000161202.2
      Conserved Domains (2) summary
      cd12429
      Location:184 → 247
      RRM_DNAJC17; RNA recognition motif in the DnaJ homolog subfamily C member 17
      pfam00226
      Location:11 → 73
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      1074539..1175056 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214337.1 → XP_068070438.1  dnaJ homolog subfamily C member 17 isoform X1

      UniProtKB/TrEMBL
      Q7ZUU4
    Nucleotide Protein Strain
    Heading Accession and Version

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