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    si:dkey-221j11.3 si:dkey-221j11.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100317168, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:dkey-221j11.3provided by ZNC
    Official Full Name
    si:dkey-221j11.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-247
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090313-247
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    See si:dkey-221j11.3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (42544009..42550437)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (42417949..42424377)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene membrane-associated ring finger (C3HC4) 5 Neighboring gene cytoplasmic polyadenylation element binding protein 3 Neighboring gene BTAF1 RNA polymerase II, B-TFIID transcription factor-associated Neighboring gene androgen-dependent TFPI-regulating protein Neighboring gene family with sequence similarity 83 member Ha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_137197.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      EH449409

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      42544009..42550437
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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