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    col-149 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179431, updated on 9-Dec-2024

    Summary

    Official Symbol
    col-149
    Official Full Name
    Nematode cuticle collagen N-terminal domain-containing protein
    Primary source
    WormBase:WBGene00000722
    Locus tag
    CELE_B0024.1
    See related
    AllianceGenome:WB:WBGene00000722
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See col-149 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    2
    Sequence:
    Chromosome: V; NC_003283.11 (10291701..10292869, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Lysozyme-like protein 3 Neighboring gene CX domain-containing protein Neighboring gene Hexosyltransferase Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene ncRNA

    Interactions

    General gene information

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    part_of collagen trimer  
    located_in membrane  

    General protein information

    Preferred Names
    Nematode cuticle collagen N-terminal domain-containing protein
    NP_505646.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      10291701..10292869 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073245.7NP_505646.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_505646.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17417
      Conserved Domains (2) summary
      pfam01391
      Location:221278
      Collagen; Collagen triple helix repeat (20 copies)
      smart01088
      Location:658
      Col_cuticle_N; Nematode cuticle collagen N-terminal domain
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