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    H32C10.1 Cat eye syndrome critical region protein 5;Host attachment protein [ Caenorhabditis elegans ]

    Gene ID: 186796, updated on 9-Dec-2024

    Summary

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    Official Symbol
    H32C10.1
    Official Full Name
    Cat eye syndrome critical region protein 5;Host attachment protein
    Primary source
    WormBase:WBGene00019255
    Locus tag
    CELE_H32C10.1
    See related
    AllianceGenome:WB:WBGene00019255
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in glycerophospholipid biosynthetic process. Predicted to be active in mitochondrion. Orthologous to human HDHD5 (haloacid dehalogenase like hydrolase domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See H32C10.1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    8
    Sequence:
    Chromosome: IV; NC_003282.8 (5934346..5937509)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Calcium uniporter protein, mitochondrial Neighboring gene Fructose-2,6-bisphosphatase Neighboring gene ncRNA Neighboring gene Innexin;Innexin-7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in glycerophospholipid biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Cat eye syndrome critical region protein 5;Host attachment protein
    NP_001255276.1
    • Confirmed by transcript evidence
    NP_001255277.1
    • Confirmed by transcript evidence
    NP_001368395.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      5934346..5937509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268348.4 → NP_001255277.1  Cat eye syndrome critical region protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255277.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      I2HA96
      Conserved Domains (3) summary
      TIGR01456
      Location:21 → 351
      CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
      pfam13242
      Location:261 → 306
      Hydrolase_like; HAD-hyrolase-like
      pfam13344
      Location:23 → 126
      Hydrolase_6; Haloacid dehalogenase-like hydrolase

    2. NM_001268347.3 → NP_001255276.1  Cat eye syndrome critical region protein 5 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001255276.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9TYQ4
      Conserved Domains (3) summary
      TIGR01456
      Location:21 → 356
      CECR5; HAD-superfamily class IIA hydrolase, TIGR01456, CECR5
      pfam13242
      Location:266 → 311
      Hydrolase_like; HAD-hyrolase-like
      pfam13344
      Location:23 → 131
      Hydrolase_6; Haloacid dehalogenase-like hydrolase

    3. NM_001380248.1 → NP_001368395.1  Host attachment protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      V6CLN3
      Conserved Domains (1) summary
      cl21460
      Location:2 → 73
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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