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    cid-1 4Fe-4S ferredoxin-type domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 175707, updated on 9-Dec-2024

    Summary

    Official Symbol
    cid-1
    Official Full Name
    4Fe-4S ferredoxin-type domain-containing protein
    Primary source
    WormBase:WBGene00019629
    Locus tag
    CELE_K10D2.3
    See related
    AllianceGenome:WB:WBGene00019629
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Enables RNA uridylyltransferase activity. Involved in RNA 3' uridylation. Located in P granule; condensed nuclear chromosome; and perinuclear region of cytoplasm. Is expressed in germ line and intestine. Human ortholog(s) of this gene implicated in liver benign neoplasm. Orthologous to human TUT4 (terminal uridylyl transferase 4) and TUT7 (terminal uridylyl transferase 7). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See cid-1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    12
    Sequence:
    Chromosome: III; NC_003281.10 (5173922..5180507)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Anaphase-promoting complex subunit emb-1 Neighboring gene ncRNA Neighboring gene PAP-associated domain-containing protein

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA uridylyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA uridylyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables nucleotidyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in RNA 3' uridylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in RNA 3' uridylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in P granule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    4Fe-4S ferredoxin-type domain-containing protein
    NP_498099.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5173922..5180507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065698.6NP_498099.1  4Fe-4S ferredoxin-type domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498099.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q09409
      Conserved Domains (3) summary
      cd05402
      Location:10291151
      NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
      COG5260
      Location:10341317
      TRF4; DNA polymerase sigma [Replication, recombination and repair]
      pfam03828
      Location:574625
      PAP_assoc; Cid1 family poly A polymerase