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    scav-6 SCAVenger receptor (CD36 family) related [ Caenorhabditis elegans ]

    Gene ID: 184107, updated on 9-Dec-2024

    Summary

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    Official Symbol
    scav-6
    Official Full Name
    SCAVenger receptor (CD36 family) related
    Primary source
    WormBase:WBGene00008542
    Locus tag
    CELE_F07A5.3
    See related
    AllianceGenome:WB:WBGene00008542
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable scavenger receptor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be active in membrane. Orthologous to human SCARB1 (scavenger receptor class B member 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See scav-6 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    12
    Sequence:
    Chromosome: I; NC_003279.8 (7354491..7357213)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene NF-kappa-B inhibitor-interacting Ras-like protein Neighboring gene Innexin-14 Neighboring gene Expressed conserved protein Neighboring gene Olfactomedin-like domain-containing protein Neighboring gene C2 domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionarily conserved recognition and innate immunity to fungal pathogens by the scavenger receptors SCARF1 and CD36. Means TK, et al. J Exp Med, 2009 Mar 16. PMID 19237602, Free PMC Article
    2. SCAV-3 affects apoptotic cell degradation in Caenorhabditis elegans. Ma A, et al. FEBS Open Bio, 2023 May. PMID 36947094, Free PMC Article
    3. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables scavenger receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SCAVenger receptor (CD36 family) related
    NP_492081.1
    • Product from WormBase gene class scav;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      7354491..7357213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_059680.6 → NP_492081.1  SCAVenger receptor (CD36 family) related [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492081.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19140
      Conserved Domains (1) summary
      pfam01130
      Location:18 → 547
      CD36; CD36 family
    Nucleotide Protein
    Heading Accession and Version

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