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    • Showing Current items.

    W06E11.1 RNB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 189252, updated on 9-Dec-2024

    Summary

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    Official Symbol
    W06E11.1
    Official Full Name
    RNB domain-containing protein
    Primary source
    WormBase:WBGene00021061
    Locus tag
    CELE_W06E11.1
    See related
    AllianceGenome:WB:WBGene00021061
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in tRNA transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See W06E11.1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003281.10 (642059..646343)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Golgin subfamily A member 7/ERF4 domain-containing protein Neighboring gene Major sperm protein Neighboring gene Protein orai Neighboring gene BRICHOS domain-containing protein;BRICHOS domain-containing protein C09F5.1 Neighboring gene Putative zinc finger protein C09F5.3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RNA polymerase III complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNB domain-containing protein
    NP_497229.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      642059..646343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_064828.2 → NP_497229.1  RNB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_497229.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q23206
      Conserved Domains (1) summary
      pfam04801
      Location:34 → 470
      Sin_N; Sin-like protein conserved region
    Nucleotide Protein
    Heading Accession and Version

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