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    tag-65 CID domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179857, updated on 9-Dec-2024

    Summary

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    Official Symbol
    tag-65
    Official Full Name
    CID domain-containing protein
    Primary source
    WormBase:WBGene00006442
    Locus tag
    CELE_F58G11.5
    See related
    AllianceGenome:WB:WBGene00006442
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be involved in intracellular calcium ion homeostasis. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See tag-65 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    10
    Sequence:
    Chromosome: V; NC_003283.11 (13676022..13678587, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase rde-12 Neighboring gene HTH OST-type domain-containing protein Neighboring gene MFS domain-containing protein Neighboring gene Vacuolar fusion protein CCZ1 homolog Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development. Arur S, et al. Proc Natl Acad Sci U S A, 2009 Mar 24. PMID 19264959, Free PMC Article
    2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in perinuclear region of cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CID domain-containing protein
    NP_506386.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      13676022..13678587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_073985.7 → NP_506386.1  CID domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506386.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5ED97
      Conserved Domains (2) summary
      smart00443
      Location:602 → 649
      G_patch; glycine rich nucleic binding domain
      pfam04818
      Location:165 → 226
      CTD_bind; RNA polymerase II-binding domain
    Nucleotide Protein
    Heading Accession and Version

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