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    C18C4.7 GRIP domain-containing protein;Golgin-84 [ Caenorhabditis elegans ]

    Gene ID: 178941, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C18C4.7
    Official Full Name
    GRIP domain-containing protein;Golgin-84
    Primary source
    WormBase:WBGene00015968
    Locus tag
    CELE_C18C4.7
    See related
    AllianceGenome:WB:WBGene00015968
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in myosin filament. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See C18C4.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    23
    Sequence:
    Chromosome: V; NC_003283.11 (5550314..5567219, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Cystic Fibrosis Transmembrane conductance regulator homolog Neighboring gene Putative UDP-glucuronosyltransferase ugt-48 Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Globin domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Globin-like protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables microfilament motor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of myosin II complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in myosin filament IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in myosin filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GRIP domain-containing protein;Golgin-84
    NP_001343821.1
    • Confirmed by transcript evidence
    NP_001343823.1
    • Confirmed by transcript evidence
    NP_001359878.1
    • Partially confirmed by transcript evidence
    NP_001380227.1
    • Confirmed by transcript evidence
    NP_741539.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      5550314..5567219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001373024.2 → NP_001359878.1  GRIP domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8MNV5
      Conserved Domains (2) summary
      COG1196
      Location:187 → 959
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:5 → 279
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001356643.3 → NP_001343821.1  Golgin-84 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C3A0
      Conserved Domains (1) summary
      cl25732
      Location:573 → 1286
      SMC_N; RecF/RecN/SMC N terminal domain

    3. NM_001392515.1 → NP_001380227.1  GRIP domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C3R1
      Conserved Domains (2) summary
      COG1196
      Location:319 → 1116
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:97 → 341
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    4. NM_171458.7 → NP_741539.2  GRIP domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_741539.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYV8
      Conserved Domains (2) summary
      COG1196
      Location:187 → 984
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl19219
      Location:17 → 101
      DUF342; Protein of unknown function (DUF342)

    5. NM_001356645.5 → NP_001343823.1  GRIP domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2C9C3J8
      Conserved Domains (1) summary
      cl25732
      Location:293 → 1090
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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