U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Atp6ap2 ATPase, H+ transporting, lysosomal accessory protein 2 [ Mus musculus (house mouse) ]

    Gene ID: 70495, updated on 9-Dec-2024

    Summary

    Official Symbol
    Atp6ap2provided by MGI
    Official Full Name
    ATPase, H+ transporting, lysosomal accessory protein 2provided by MGI
    Primary source
    MGI:MGI:1917745
    See related
    Ensembl:ENSMUSG00000031007 AllianceGenome:MGI:1917745
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PRR; M8-9; (P)RR; Atp6ip2; APT6M8-9; ATP6M8-9; 5730403E06Rik
    Summary
    Predicted to enable signaling receptor activity. Involved in central nervous system maturation; positive regulation of Wnt signaling pathway; and synaptic vesicle lumen acidification. Located in endosome membrane and lysosomal membrane. Is expressed in brain; extraembryonic component; intestine; neural retina; and renal cortex. Human ortholog(s) of this gene implicated in X-linked parkinsonism-spasticity syndrome; congenital disorder of glycosylation type II; and syndromic X-linked intellectual disability Hedera type. Orthologous to human ATP6AP2 (ATPase H+ transporting accessory protein 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 38.8), cerebellum adult (RPKM 37.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Atp6ap2 in Genome Data Viewer
    Location:
    X A1.1; X 7.42 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (12453998..12483290)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (12587759..12617051)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46752 Neighboring gene predicted gene, 54072 Neighboring gene STARR-seq mESC enhancer starr_46755 Neighboring gene STARR-positive B cell enhancer ABC_E3259 Neighboring gene IK cytokine pseudogene Neighboring gene nucleolar protein 56 pseudogene Neighboring gene predicted pseudogene 4984

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in angiotensin maturation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in angiotensin maturation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in central nervous system maturation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in central nervous system maturation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in eye pigmentation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in eye pigmentation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in head morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in head morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lysosomal lumen acidification ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lysosomal lumen acidification ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of Wnt signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of Wnt signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of Wnt signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of canonical Wnt signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of canonical Wnt signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of transforming growth factor beta1 production IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of transforming growth factor beta1 production ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of MAPK cascade IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of MAPK cascade ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in rostrocaudal neural tube patterning IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in rostrocaudal neural tube patterning ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in synaptic vesicle lumen acidification EXP
    Inferred from Experiment
    more info
    PubMed 
    involved_in synaptic vesicle lumen acidification IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in synaptic vesicle lumen acidification IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in clathrin-coated vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in dendritic spine membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in external side of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in lysosomal membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lysosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of vacuolar proton-transporting V-type ATPase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of vacuolar proton-transporting V-type ATPase, V0 domain ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    renin receptor
    Names
    ATPase H(+)-transporting lysosomal-interacting protein 2
    ATPase, H+ transporting, lysosomal interacting protein 1
    ATPase, H+ transporting, lysosomal interacting protein 2
    prorenin receptor
    renin/prorenin receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027439.4NP_081715.1  renin receptor precursor

      See identical proteins and their annotated locations for NP_081715.1

      Status: VALIDATED

      Source sequence(s)
      AK076495, AW475779, AW985491, BY784908
      Consensus CDS
      CCDS30023.1
      UniProtKB/Swiss-Prot
      A2BDN5, Q8BVU6, Q91YU5, Q9CYN9
      UniProtKB/TrEMBL
      Q1XID4
      Related
      ENSMUSP00000033313.3, ENSMUST00000033313.3
      Conserved Domains (1) summary
      pfam07850
      Location:255350
      Renin_r; Renin receptor-like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      12453998..12483290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)