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    Smim35 small integral membrane protein 35 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102546809, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Smim35provided by RGD
    Official Full Name
    small integral membrane protein 35provided by RGD
    Primary source
    RGD:7587328
    See related
    EnsemblRapid:ENSRNOG00000076991 AllianceGenome:RGD:7587328
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human SMIM35 (small integral membrane protein 35). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 14.8), Brain (RPKM 13.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Smim35 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (54395878..54457757)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (45549710..45558135)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (49491533..49556062)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene sodium voltage-gated channel beta subunit 2 Neighboring gene sodium voltage-gated channel beta subunit 4 Neighboring gene transmembrane serine protease 4 Neighboring gene uncharacterized LOC120094136 Neighboring gene interleukin 10 receptor subunit alpha Neighboring gene glutathione S-transferase pi 1, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    small integral membrane protein 35

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430506.1 → NP_001417435.1  small integral membrane protein 35 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008

    2. NM_001430507.1 → NP_001417436.1  small integral membrane protein 35 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      54395878..54457757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006242974.5 → XP_006243036.2  small integral membrane protein 35 isoform X1

      Related
      ENSRNOP00000108040.1, ENSRNOT00000146649.1

    2. XM_063266383.1 → XP_063122453.1  small integral membrane protein 35 isoform X2

    3. XM_063266384.1 → XP_063122454.1  small integral membrane protein 35 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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