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    Zfp862 zinc finger protein 862 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681217, updated on 9-Dec-2024

    Summary

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    Symbol
    Zfp862provided by RGD
    Full Name
    zinc finger protein 862provided by RGD
    Primary source
    RGD:1598054
    See related
    EnsemblRapid:ENSRNOG00000091106 AllianceGenome:RGD:1598054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein dimerization activity. Predicted to be involved in regulation of DNA-templated transcription. Orthologous to human ZNF862 (zinc finger protein 862). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 19.4), Lung (RPKM 15.6) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zfp862 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78783833..78812884)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77452930..77481981)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78136183..78165230)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 467 Neighboring gene SCO-spondin Neighboring gene uncharacterized LOC120102263 Neighboring gene ATPase, H+ transporting V0 subunit e2 Neighboring gene leucine rich repeat containing 61 Neighboring gene retinoic acid receptor responder 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 862

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      78783833..78812884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017592988.2 → XP_017448477.1  zinc finger protein 862 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AM86

    2. XM_017592985.2 → XP_017448474.1  zinc finger protein 862 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AM86
      Related
      ENSRNOP00000109341.1, ENSRNOT00000135251.1

    3. XM_039108663.1 → XP_038964591.1  zinc finger protein 862 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AM86
      Conserved Domains (4) summary
      smart00349
      Location:292 → 352
      KRAB; krueppel associated box
      smart00597
      Location:94 → 176
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:980 → 1027
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      cl02581
      Location:11 → 35
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_017592987.2 → XP_017448476.1  zinc finger protein 862 isoform X3

      UniProtKB/TrEMBL
      A0A8I6AM86

    5. XM_017592990.3 → XP_017448479.1  zinc finger protein 862 isoform X6

      UniProtKB/TrEMBL
      A0A8I6AM86
      Conserved Domains (3) summary
      smart00349
      Location:240 → 300
      KRAB; krueppel associated box
      smart00597
      Location:42 → 124
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:928 → 975
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    6. XM_039108665.2 → XP_038964593.1  zinc finger protein 862 isoform X6

      UniProtKB/TrEMBL
      A0A8I6AM86
      Conserved Domains (3) summary
      smart00349
      Location:240 → 300
      KRAB; krueppel associated box
      smart00597
      Location:42 → 124
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:928 → 975
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    7. XM_063286959.1 → XP_063143029.1  zinc finger protein 862 isoform X7

    8. XM_017592989.3 → XP_017448478.1  zinc finger protein 862 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AM86

    9. XM_039108669.1 → XP_038964597.1  zinc finger protein 862 isoform X8

      Conserved Domains (2) summary
      smart00597
      Location:52 → 135
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:610 → 657
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    10. XM_039108667.1 → XP_038964595.1  zinc finger protein 862 isoform X8

      Conserved Domains (2) summary
      smart00597
      Location:52 → 135
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:610 → 657
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    11. XM_039108670.1 → XP_038964598.1  zinc finger protein 862 isoform X8

      Conserved Domains (2) summary
      smart00597
      Location:52 → 135
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:610 → 657
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    12. XM_039108668.1 → XP_038964596.1  zinc finger protein 862 isoform X8

      Conserved Domains (2) summary
      smart00597
      Location:52 → 135
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:610 → 657
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region

    RNA

    1. XR_005503550.1 RNA Sequence

    2. XR_005503549.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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