RR16 response regulator 16 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RR16
Official Full Name: response regulator 16
Primary source: TAIR:AT2G40670
Locus tag: AT2G40670
See related: Araport:AT2G40670
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ARR16; response regulator 16; RESPONSE REGULATOR 16; T7D17.15; T7D17_15
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Genomic context

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See RR16 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 5

Sequence:: Chromosome: 2; NC_003071.7 (16969673..16972113)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Asymmetric distribution of cytokinins determines root hydrotropism in Arabidopsis thaliana.
Title: Asymmetric distribution of cytokinins determines root hydrotropism in Arabidopsis thaliana.
cytokinin signaling, that can provide meristematic properties required for CMM activity and growth, is enabled by the transcription factor SPATULA (SPT). Meanwhile, cytokinin signaling is confined to the medial domain by the cytokinin response repressor (AHP6), and perhaps by ARR16 (a type-A ARR) as well, both present in the lateral domains (presumptive valves) of the developing gynoecia.
Title: The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001202793.2

Supported by ESTs:

NM_129629.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables phosphorelay response regulator activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within cytokinin-activated signaling pathway	TAS Traceable Author Statement more info	PubMed
involved_in phosphorelay signal transduction system	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	TAS Traceable Author Statement more info	PubMed
acts_upstream_of_or_within response to cytokinin	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in cytoplasm	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: response regulator 16

NP_001189722.1

response regulator 16 (RR16); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 17 (TAIR:AT3G56380.1).

NP_181599.1

response regulator 16 (RR16); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 17 (TAIR:AT3G56380.1); Has 23045 Blast hits to 22821 proteins in 2006 species: Archae - 145; Bacteria - 19499; Metazoa - 15; Fungi - 406; Plants - 1290; Viruses - 6; Other Eukaryotes - 1684 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

16969673..16972113

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_129629.3 → NP_181599.1 response regulator 16 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_181599.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9SHC2

UniProtKB/TrEMBL

A0A178VP28, A0A5S9X5W0, B4G294

Conserved Domains (1) summary

cd00156
Location:32 → 159

REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
NM_001202793.2 → NP_001189722.1 response regulator 16 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189722.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2EFC0, F4II22

Conserved Domains (1) summary

cd00156
Location:32 → 160

REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...