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    SWIM zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842351, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIM zinc finger family protein
    Primary source
    TAIR:AT1G60560
    Locus tag
    AT1G60560
    See related
    Araport:AT1G60560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8A5.10; F8A5_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (22308478..22311377, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene enoyl-CoA hydratase/isomerase D Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001333898.1
    NM_104740.3
    NM_202325.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIM zinc finger family protein
    NP_176256.2
    • SWIM zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 86 Blast hits to 86 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_974054.1
    • SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22308478..22311377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_202325.2 → NP_974054.1  SWIM zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974054.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCK8, F4HPV8

    2. NM_104740.3 → NP_176256.2  SWIM zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176256.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WET1, A0A654EJN8, Q8RY56
      Conserved Domains (1) summary
      pfam04434
      Location:570 → 606
      SWIM; SWIM zinc finger

    3. NM_001333898.1 → NP_001320926.1  SWIM zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WCK8, A0A1P8APC7
    Nucleotide Protein
    Heading Accession and Version

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