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    PPPDE putative thiol peptidase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844408, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PPPDE putative thiol peptidase family protein
    Primary source
    TAIR:AT1G80690
    Locus tag
    AT1G80690
    See related
    Araport:AT1G80690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23A5.4; F23A5_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30329039..30330944, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNAse THREE-like protein 1 Neighboring gene H[+]-ATPase 9 Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene SUPPRESSOR OF AUXIN RESISTANCE 3 Neighboring gene stress response NST1-like protein Neighboring gene DROUGHT SENSITIVE 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001335002.1
    NM_106717.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PPPDE putative thiol peptidase family protein
    NP_565243.1
    • PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30329039..30330944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106717.3 → NP_565243.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565243.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W4J2, Q8LA90
      Conserved Domains (1) summary
      pfam05903
      Location:16 → 150
      Peptidase_C97; PPPDE putative peptidase domain

    2. NM_001335002.1 → NP_001320684.1  PPPDE putative thiol peptidase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EAF0, Q9SAI9
      Conserved Domains (1) summary
      pfam05903
      Location:16 → 154
      Peptidase_C97; PPPDE putative peptidase domain
    Nucleotide Protein
    Heading Accession and Version

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