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    JAL34 Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820894, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JAL34
    Official Full Name
    Mannose-binding lectin superfamily protein
    Primary source
    TAIR:AT3G16460
    Locus tag
    AT3G16460
    See related
    Araport:AT3G16460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    jacalin-related lectin 34; T2O4.14
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    Genomic context

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    See JAL34 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (5592491..5595912)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene myrosinase-binding protein-like protein-300B Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene mitochondrial processing peptidase alpha subunit Neighboring gene IQ-domain 26

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The proteome landscape of the root cap reveals a role for the jacalin-associated lectin JAL10 in the salt-induced endoplasmic reticulum stress pathway. Das KK, et al. Plant Commun, 2023 Nov 13. PMID 37789617, Free PMC Article
    2. Proteomic survey of copper-binding proteins in Arabidopsis roots by immobilized metal affinity chromatography and mass spectrometry. Kung CC, et al. Proteomics, 2006 May. PMID 16526091
    3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    4. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
    5. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112517.4
    NM_202595.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding HDA PubMed 
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to salt stress IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Mannose-binding lectin superfamily protein
    NP_188267.1
    • Mannose-binding lectin superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 154784 Blast hits to 42550 proteins in 2542 species: Archae - 433; Bacteria - 67678; Metazoa - 26922; Fungi - 9328; Plants - 12326; Viruses - 2371; Other Eukaryotes - 35726 (source: NCBI BLink).
    NP_974324.2
    • Mannose-binding lectin superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 154923 Blast hits to 42609 proteins in 2555 species: Archae - 433; Bacteria - 67811; Metazoa - 26922; Fungi - 9329; Plants - 12326; Viruses - 2376; Other Eukaryotes - 35726 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5592491..5595912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112517.4 → NP_188267.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188267.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04310, Q3E6V7, Q56W96
      UniProtKB/TrEMBL
      A0A654FD41
      Conserved Domains (1) summary
      pfam01419
      Location:417 → 548
      Jacalin; Jacalin-like lectin domain

    2. NM_202595.3 → NP_974324.2  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974324.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04310, Q3E6V7, Q56W96
      UniProtKB/TrEMBL
      A0A654FD41
      Conserved Domains (1) summary
      pfam01419
      Location:417 → 548
      Jacalin; Jacalin-like lectin domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04310.1

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