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    bZIP19 Basic-leucine zipper (bZIP) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829656, updated on 18-Sep-2024

    Summary

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    Official Symbol
    bZIP19
    Official Full Name
    Basic-leucine zipper (bZIP) transcription factor family protein
    Primary source
    TAIR:AT4G35040
    Locus tag
    AT4G35040
    See related
    Araport:AT4G35040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    M4E13.100; M4E13_100
    Summary
    Basic-region leucine zipper (bZIP19) transcription factor involved in the adaptation to zinc deficiency. Binds ZDRE motifs.
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    Genomic context

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    See bZIP19 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (16680209..16682881)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RAC-like 3 Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene SBP (S-ribonuclease binding protein) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reduced expression of bZIP19 and bZIP23 increases zinc and cadmium accumulation in Arabidopsis halleri. Spielmann J, et al. Plant Cell Environ, 2024 Jun. PMID 38404193
    2. Model of how plants sense zinc deficiency. Assunção AG, et al. Metallomics, 2013 Sep. PMID 23851954
    3. Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency. Assunção AG, et al. Proc Natl Acad Sci U S A, 2010 Jun 1. PMID 20479230, Free PMC Article
    4. Identification of putative target genes of bZIP19, a transcription factor essential for Arabidopsis adaptation to Zn deficiency in roots. Inaba S, et al. Plant J, 2015 Oct. PMID 26306426
    5. bZIP transcription factors in Arabidopsis. Jakoby M, et al. Trends Plant Sci, 2002 Mar. PMID 11906833

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Reduced expression of bZIP19 and bZIP23 increases zinc and cadmium accumulation in Arabidopsis halleri.
      Title: Reduced expression of bZIP19 and bZIP23 increases zinc and cadmium accumulation in Arabidopsis halleri.
    2. Studies indicate that zinc deficiency leads to the activation of bZIP9 and bZIP23.
      Title: Model of how plants sense zinc deficiency.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001342321.1
    NM_001342322.1
    NM_001342323.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cellular response to zinc ion IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to zinc ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Basic-leucine zipper (bZIP) transcription factor family protein
    NP_001320139.1
    • bZIP19; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to zinc ion, response to zinc ion; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G16770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16680209..16682881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119670.5 → NP_567974.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567974.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49611, Q8LD81, Q8VY76
      UniProtKB/TrEMBL
      A0A178UVU8, A0A5S9XYR2, A0A654FW40
      Conserved Domains (2) summary
      smart00338
      Location:91 → 152
      BRLZ; basic region leucin zipper
      cd14686
      Location:93 → 146
      bZIP; coiled coil [structural motif]

    2. NM_001342321.1 → NP_001320139.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49611, Q8LD81, Q8VY76
      UniProtKB/TrEMBL
      A0A178UVU8, A0A5S9XYR2, A0A654FW40
      Conserved Domains (2) summary
      smart00338
      Location:91 → 152
      BRLZ; basic region leucin zipper
      cd14686
      Location:93 → 146
      bZIP; coiled coil [structural motif]

    3. NM_001342322.1 → NP_001328012.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49611, Q8LD81, Q8VY76
      UniProtKB/TrEMBL
      A0A178UVU8, A0A5S9XYR2, A0A654FW40
      Conserved Domains (2) summary
      smart00338
      Location:91 → 152
      BRLZ; basic region leucin zipper
      cd14686
      Location:93 → 146
      bZIP; coiled coil [structural motif]

    4. NM_001342323.1 → NP_001328011.1  Basic-leucine zipper (bZIP) transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49611, Q8LD81, Q8VY76
      UniProtKB/TrEMBL
      A0A178UVU8, A0A5S9XYR2, A0A654FW40
      Conserved Domains (2) summary
      smart00338
      Location:91 → 152
      BRLZ; basic region leucin zipper
      cd14686
      Location:93 → 146
      bZIP; coiled coil [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VY76.1

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