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    Glycosyl hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823853, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Glycosyl hydrolase family protein
    Primary source
    TAIR:AT3G47000
    Locus tag
    AT3G47000
    See related
    Araport:AT3G47000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (17313646..17316639, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene alpha-glucan phosphorylase 2 Neighboring gene phosphate transporter 4;3 Neighboring gene DUF740 family protein, putative (DUF740) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glycosyl hydrolase family protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001339297.1
    NM_001339298.1
    NM_114567.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Glycosyl hydrolase family protein
    NP_190284.1
    • Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 3, active site (InterPro:IPR019800); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT3G47010.1); Has 10697 Blast hits to 9860 proteins in 1558 species: Archae - 69; Bacteria - 6575; Metazoa - 14; Fungi - 1579; Plants - 487; Viruses - 0; Other Eukaryotes - 1973 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17313646..17316639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114567.5 → NP_190284.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190284.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VDC7, Q9SD73
      Conserved Domains (3) summary
      COG1472
      Location:28 → 465
      BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
      pfam01915
      Location:394 → 604
      Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain
      cl07971
      Location:30 → 357
      Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain

    2. NM_001339297.1 → NP_001327073.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR69

    3. NM_001339298.1 → NP_001327072.1  Glycosyl hydrolase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LR68
    Nucleotide Protein
    Heading Accession and Version

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