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    Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825469, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Cysteine proteinases superfamily protein
    Primary source
    TAIR:AT3G62940
    Locus tag
    AT3G62940
    See related
    Araport:AT3G62940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    OTU5; ovarian tumor domain (OTU)-containing DUB (deubiquitilating enzyme) 5
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (23262795..23264731, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene zinc metalloproteinase aureolysin Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein Neighboring gene Thioredoxin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Epigenomic regulation of OTU5 in Arabidopsis thaliana. Hsieh JA, et al. Genomics, 2020 Sep. PMID 32298708
    2. The Deubiquitinase OTU5 Regulates Root Responses to Phosphate Starvation. Suen DF, et al. Plant Physiol, 2018 Mar. PMID 29301952, Free PMC Article
    3. Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals. Yen MR, et al. Plant Physiol, 2017 Dec. PMID 29061907, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001203236.2
    NM_001340185.1
    NM_001340186.1
    NM_116159.4
    NM_180408.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    Cysteine proteinases superfamily protein
    NP_001190165.1
    • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1).
    NP_191853.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 5815 Blast hits to 4395 proteins in 552 species: Archae - 16; Bacteria - 640; Metazoa - 1732; Fungi - 585; Plants - 331; Viruses - 22; Other Eukaryotes - 2489 (source: NCBI BLink).
    NP_850739.1
    • Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23262795..23264731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180408.3 → NP_850739.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850739.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384K877, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:4 → 307
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:171 → 305
      OTU; OTU-like cysteine protease

    2. NM_116159.4 → NP_191853.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191853.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease

    3. NM_001203236.2 → NP_001190165.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190165.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease

    4. NM_001340185.1 → NP_001325820.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VEN6, A0A178VGH0, B9DF87, Q8W457, Q9LYC7
      UniProtKB/TrEMBL
      A0A384LMN3, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:20 → 323
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:187 → 321
      OTU; OTU-like cysteine protease

    5. NM_001340186.1 → NP_001325819.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A384K877, A0A5S9XN83
      Conserved Domains (2) summary
      COG5539
      Location:4 → 307
      COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
      pfam02338
      Location:171 → 305
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LYC7.1

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