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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834446, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT5G44230
    Locus tag
    AT5G44230
    See related
    Araport:AT5G44230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLN1.16; MLN1_16
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (17814244..17816789)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene erf domain protein 9 Neighboring gene F-box family protein Neighboring gene aminophospholipid ATPase 2 Neighboring gene peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_123790.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_199236.1
    • Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: embryo, leaf; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 34838 Blast hits to 13612 proteins in 233 species: Archae - 0; Bacteria - 9; Metazoa - 42; Fungi - 69; Plants - 34172; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17814244..17816789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344538.1 → NP_001332652.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BHN8, A0A654G801

    2. NM_123790.2 → NP_199236.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199236.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FFG8
      UniProtKB/TrEMBL
      A0A654G801
      Conserved Domains (4) summary
      sd00004
      Location:351 → 378
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:247 → 277
      PPR; PPR repeat
      pfam13041
      Location:318 → 360
      PPR_2; PPR repeat family
      pfam14432
      Location:522 → 647
      DYW_deaminase; DYW family of nucleic acid deaminases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFG8.1

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