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    DAR6 DA1-related protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836794, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DAR6
    Official Full Name
    DA1-related protein 6
    Primary source
    TAIR:AT5G66620
    Locus tag
    AT5G66620
    See related
    Araport:AT5G66620
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DA1-related protein 6; K1F13.30; K1F13_30
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    Genomic context

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    See DAR6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (26588411..26592330)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene DA1-related protein 7 Neighboring gene ncRNA Neighboring gene DA1-related protein 5 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001345790.1
    NM_126060.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DA1-related protein 6
    NP_201463.1
    • DA1-related protein 6 (DAR6); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Ubiquitin interacting motif (InterPro:IPR003903), Protein of unknown function DUF3633 (InterPro:IPR022087); BEST Arabidopsis thaliana protein match is: DA1-related protein 5 (TAIR:AT5G66630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26588411..26592330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345788.1 → NP_001330142.1  DA1-related protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9X5

    2. NM_001345789.1 → NP_001330144.1  DA1-related protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9V9, A0A5S9YHK4
      Conserved Domains (3) summary
      PTZ00121
      Location:13 → 262
      PTZ00121; MAEBL; Provisional
      cd09396
      Location:277 → 332
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:419 → 633
      DA1-like; Protein DA1

    3. NM_126060.1 → NP_201463.1  DA1-related protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201463.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJX8
      UniProtKB/TrEMBL
      A0A5S9YHK4
      Conserved Domains (2) summary
      cd09396
      Location:286 → 341
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:428 → 642
      DUF3633; Protein of unknown function (DUF3633)

    4. NM_001345790.1 → NP_001330143.1  DA1-related protein 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9V9, A0A5S9YHK4
      Conserved Domains (3) summary
      PTZ00121
      Location:13 → 262
      PTZ00121; MAEBL; Provisional
      cd09396
      Location:277 → 332
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:419 → 633
      DA1-like; Protein DA1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJX8.1

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