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    PH-response transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827228, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PH-response transcription factor
    Primary source
    TAIR:AT4G15545
    Locus tag
    AT4G15545
    See related
    Araport:AT4G15545
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (8875656..8877799)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA/rRNA methyltransferase (SpoU) family protein Neighboring gene pyruvate orthophosphate dikinase Neighboring gene EamA-like transporter family Neighboring gene indole-3-acetate beta-D-glucosyltransferase Neighboring gene Deoxyxylulose-5-phosphate synthase Neighboring gene superoxide dismutase 1 copper chaperone-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Family of NAI2-Interacting Proteins in the Biogenesis of the ER Body and Related Structures. Wang Z, et al. Plant Physiol, 2019 May. PMID 30770459, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Role of AT4G15545(NAIP1) in the formation of endoplasmic reticulum.
      Title: A Family of NAI2-Interacting Proteins in the Biogenesis of the ER Body and Related Structures.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117645.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within ER body organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PH-response transcription factor
    NP_567470.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8875656..8877799
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117645.3 → NP_567470.1  PH-response transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567470.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93W28
      UniProtKB/TrEMBL
      A0A178V5U8, A0A5S9XSP3, A0A654FPL5
      Conserved Domains (2) summary
      PHA03307
      Location:155 → 262
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam01576
      Location:49 → 128
      Myosin_tail_1; Myosin tail
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93W28.1

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