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    Cdiptos CDIP transferase, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 381922, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cdiptosprovided by MGI
    Official Full Name
    CDIP transferase, opposite strandprovided by MGI
    Primary source
    MGI:MGI:2443610
    See related
    Ensembl:ENSMUSG00000097075 AllianceGenome:MGI:2443610
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D830044I16Rik
    Summary
    Orthologous to human CDIPTOSP (CDIP transferase opposite strand, pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 214.6) See more
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    Genomic context

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    See Cdiptos in Genome Data Viewer
    Location:
    7 F3; 7 69.26 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126571792..126575575, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126972620..126976403, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene aspartate beta-hydroxylase domain containing 1 Neighboring gene seizure related 6 homolog like 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:134119536-134119823 Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase Neighboring gene major vault protein Neighboring gene STARR-seq mESC enhancer starr_20161

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The cancer-testis lncRNA lnc-CTHCC promotes hepatocellular carcinogenesis by binding hnRNP K and activating YAP1 transcription. Xia A, et al. Nat Cancer, 2022 Feb. PMID 35122073
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Putative protein T-ENOL-like; putative protein T-ENOL-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362232.2 → NP_001349161.1  Putative protein T-ENOL-like

      Status: VALIDATED

      Source sequence(s)
      AC122863
      Consensus CDS
      CCDS90331.1
      UniProtKB/TrEMBL
      A0A1D5RM53

    2. NM_001419607.1 → NP_001406536.1  Putative protein T-ENOL-like

      Status: VALIDATED

      Source sequence(s)
      AC122863
      UniProtKB/TrEMBL
      A0A1D5RM53
      Related
      ENSMUSP00000148631.2, ENSMUST00000205437.3

    3. NM_001419608.1 → NP_001406537.1  Putative protein T-ENOL-like

      Status: VALIDATED

      Source sequence(s)
      AC122863
      UniProtKB/TrEMBL
      A0A1D5RM53

    RNA

    1. NR_155497.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122863
      Related
      ENSMUST00000206816.2

    2. NR_155498.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC122863
      Related
      ENSMUST00000205903.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      126571792..126575575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242723.1 → XP_030098583.1  putative protein T-ENOL-like isoform X2

    2. XM_030242722.1 → XP_030098582.1  putative protein T-ENOL-like isoform X1

    3. XM_030242727.2 → XP_030098587.1  putative protein T-ENOL-like isoform X4

      UniProtKB/TrEMBL
      A0A1D5RM53

    4. XM_030242726.2 → XP_030098586.1  putative protein T-ENOL-like isoform X4

      UniProtKB/TrEMBL
      A0A1D5RM53
    Nucleotide Protein Strain
    Heading Accession and Version

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