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    D2096.11 GAR domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 177638, updated on 27-Dec-2024

    Summary

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    Official Symbol
    D2096.11
    Official Full Name
    GAR domain-containing protein
    Primary source
    WormBase:WBGene00017078
    Locus tag
    CELE_D2096.11
    See related
    AllianceGenome:WB:WBGene00017078
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable microtubule binding activity. Predicted to be involved in intermediate filament cytoskeleton organization. Predicted to be located in cytoplasm and cytoskeleton. Is expressed in intestine; nervous system; and pharynx. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See D2096.11 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    14
    Sequence:
    Chromosome: IV; NC_003282.8 (8388853..8394205, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Nucleosome assembly protein 1-like 1 Neighboring gene ncRNA Neighboring gene PRA1 family protein Neighboring gene Neuropeptide-Like Protein Neighboring gene C6 domain-containing protein Neighboring gene pseudo Neighboring gene Translocase, Inner Mitochondrial Membrane Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GAR domain-containing protein
    NP_001379846.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      8388853..8394205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001392350.1 → NP_001379846.1  GAR domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q19011
      Conserved Domains (2) summary
      smart00243
      Location:507 → 579
      GAS2; Growth-Arrest-Specific Protein 2 Domain
      cl00030
      Location:315 → 368
      CH_SF; calponin homology (CH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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