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    LINC01696 long intergenic non-protein coding RNA 1696 [ Homo sapiens (human) ]

    Gene ID: 105372897, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01696provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1696provided by HGNC
    Primary source
    HGNC:HGNC:52484
    See related
    Ensembl:ENSG00000227940 AllianceGenome:HGNC:52484
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

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    See LINC01696 in Genome Data Viewer
    Location:
    1q32.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (209325456..209328532)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (208572263..208575338)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (209498801..209501877)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372896 Neighboring gene TFDP1 pseudogene 1 Neighboring gene ATP5MC2 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209538955-209539455 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209546699-209547200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:209547201-209547700 Neighboring gene long intergenic non-protein coding RNA 1698 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209556921-209557668 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:209557669-209558417 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:209570036-209570918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209572682-209573562 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:209576956-209578155 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:209601163-209602086 Neighboring gene MIR205 host gene Neighboring gene microRNA 205

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135085.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AW270068, BX119711
      Related
      ENST00000658311.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      209325456..209328532
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      208572263..208575338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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