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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001009978.2 → NP_001009978.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 7
See identical proteins and their annotated locations for NP_001009978.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' and 3' ends (UTR and coding sequence) compared to variant 1. The resulting isoform (7) has shorter and distinct N- and C-termini compared to isoform 2.
- Source sequence(s)
-
AL928607
- Consensus CDS
-
CCDS16173.1
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000099712.4, ENSMUST00000102652.10
- Conserved Domains (2) summary
-
- pfam00233
Location:150 → 366
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:9 → 65
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001009979.2 → NP_001009979.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 9
See identical proteins and their annotated locations for NP_001009979.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) differs in the 5' and 3' ends (UTR and coding sequence) compared to variant 1. The resulting isoform (9) has shorter and distinct N- and C-termini compared to isoform 2.
- Source sequence(s)
-
AL928607
- Consensus CDS
-
CCDS16174.1
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000099711.4, ENSMUST00000102651.10
- Conserved Domains (2) summary
-
- pfam00233
Location:150 → 366
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:9 → 65
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159582.2 → NP_001153054.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 2
See identical proteins and their annotated locations for NP_001153054.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (2). Variants 1, 2, 10, and 11 all encode isoform 2.
- Source sequence(s)
-
AL844577, AL928607, AL928811
- Consensus CDS
-
CCDS16172.1
- UniProtKB/Swiss-Prot
- E9Q6V1, O35388, Q5I7S8, Q61481, Q8BRR9, Q9JLL9
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000099713.2, ENSMUST00000102653.8
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 434
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001355140.2 → NP_001342069.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (10), as well as variants 1, 2, and 11, encodes isoform 2.
- Source sequence(s)
-
AL844577, AL928607, AL928811
- Consensus CDS
-
CCDS16172.1
- UniProtKB/Swiss-Prot
- E9Q6V1, O35388, Q5I7S8, Q61481, Q8BRR9, Q9JLL9
- UniProtKB/TrEMBL
-
F6X0V1
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 434
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001355141.2 → NP_001342070.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (11), as well as variants 1, 2, and 10, encodes isoform 2.
- Source sequence(s)
-
AL844577, AL928607, AL928811
- Consensus CDS
-
CCDS16172.1
- UniProtKB/Swiss-Prot
- E9Q6V1, O35388, Q5I7S8, Q61481, Q8BRR9, Q9JLL9
- UniProtKB/TrEMBL
-
F6X0V1
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 434
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001355142.2 → NP_001342071.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 12
Status: VALIDATED
- Source sequence(s)
-
AL844577, AL928607, AL928811
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000160024.1, ENSMUST00000146076.9
- Conserved Domains (2) summary
-
- pfam00233
Location:202 → 418
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:61 → 117
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001355144.2 → NP_001342073.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 13
Status: VALIDATED
- Source sequence(s)
-
AL928607
- Consensus CDS
-
CCDS89501.1
- UniProtKB/TrEMBL
- A2ASF9, F6X0V1
- Related
- ENSMUSP00000088260.5, ENSMUST00000090756.11
- Conserved Domains (2) summary
-
- pfam00233
Location:114 → 330
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:14 → 29
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001420527.1 → NP_001407456.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 14
Status: VALIDATED
- Source sequence(s)
-
AL928607, AL928811
- UniProtKB/TrEMBL
-
F6X0V1
-
NM_001420529.1 → NP_001407458.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 14
Status: VALIDATED
- Source sequence(s)
-
AL928607, AL928811
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000120188.2, ENSMUST00000134739.2
-
NM_016744.5 → NP_058024.2 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform 2
See identical proteins and their annotated locations for NP_058024.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 10, and 11 all encode isoform 2.
- Source sequence(s)
-
AL844577, AL928607, AL928811
- Consensus CDS
-
CCDS16172.1
- UniProtKB/Swiss-Prot
- E9Q6V1, O35388, Q5I7S8, Q61481, Q8BRR9, Q9JLL9
- UniProtKB/TrEMBL
-
F6X0V1
- Related
- ENSMUSP00000099715.4, ENSMUST00000102655.10
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 434
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
79664797..80026862 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006498919.4 → XP_006498982.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1
See identical proteins and their annotated locations for XP_006498982.1
- UniProtKB/Swiss-Prot
- E9Q6V1, O35388, Q5I7S8, Q61481, Q8BRR9, Q9JLL9
- UniProtKB/TrEMBL
-
F6X0V1
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 434
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
XM_030248436.2 → XP_030104296.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X3
- UniProtKB/TrEMBL
-
F6X0V1
- Conserved Domains (2) summary
-
- pfam00233
Location:202 → 418
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:61 → 117
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001355143.1: Suppressed sequence
- Description
- NM_001355143.1: This RefSeq was removed because currently there is insufficient support for the transcript and protein.