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    Ubxn7 UBX domain protein 7 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303878, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ubxn7provided by RGD
    Official Full Name
    UBX domain protein 7provided by RGD
    Primary source
    RGD:1306346
    See related
    AllianceGenome:RGD:1306346
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ubxd7; RGD1306346
    Summary
    Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity; ubiquitin binding activity; and ubiquitin protein ligase binding activity. Predicted to be located in nucleoplasm. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Orthologous to human UBXN7 (UBX domain protein 7). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 49.3), Thymus (RPKM 45.6) and 9 other tissues See more
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    Genomic context

    See Ubxn7 in Genome Data Viewer
    Location:
    11q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (81932944..81965142, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (68427896..68460100, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (71662786..71695031, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene dynein light chain Tctex-type 2B Neighboring gene transmembrane 4 L six family member 19 Neighboring gene ring finger protein 168 Neighboring gene single-pass membrane protein with coiled-coil domains 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    UBX domain-containing protein 7
    Names
    UBX domain containing 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433500.1NP_001420429.1  UBX domain-containing protein 7

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      UniProtKB/TrEMBL
      A0A0G2K3V1, A6IRS2, A6IRS3, M0R9B9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      81932944..81965142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    2. NC_086029.1 Reference GRCr8

      Range
      81903235..81920998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001107086.1: Suppressed sequence

      Description
      NM_001107086.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.