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    Ccdc27 coiled-coil domain containing 27 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 679584, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc27provided by RGD
    Official Full Name
    coiled-coil domain containing 27provided by RGD
    Primary source
    RGD:1587099
    See related
    EnsemblRapid:ENSRNOG00000056358 AllianceGenome:RGD:1587099
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC27 (coiled-coil domain containing 27). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 53.2) and Kidney (RPKM 4.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc27 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (169867706..169881820, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (164585285..164599391, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (171312790..171327581, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 104 Neighboring gene leucine rich repeat containing 47 Neighboring gene uncharacterized LOC120103048 Neighboring gene small integral membrane protein 1 (Vel blood group) Neighboring gene uncharacterized LOC102551562 Neighboring gene uncharacterized LOC134479057 Neighboring gene tumor protein p73

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191063.1 → NP_001177992.1  coiled-coil domain-containing protein 27

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A0G2JV67, A0A8I6G7V0
      Related
      ENSRNOP00000069368.2, ENSRNOT00000088710.3
      Conserved Domains (2) summary
      pfam15619
      Location:375 → 554
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease
      cl15415
      Location:376 → 608
      Sec1; Sec1 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      169867706..169881820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110744.2 → XP_038966672.1  coiled-coil domain-containing protein 27 isoform X1

      Conserved Domains (1) summary
      COG1196
      Location:239 → 422
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_039110746.2 → XP_038966674.1  coiled-coil domain-containing protein 27 isoform X3

      Conserved Domains (1) summary
      COG1196
      Location:178 → 361
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_039110745.2 → XP_038966673.1  coiled-coil domain-containing protein 27 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G7V0
      Related
      ENSRNOP00000110732.1, ENSRNOT00000166545.1

    4. XM_063288372.1 → XP_063144442.1  coiled-coil domain-containing protein 27 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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