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    Cfap97d1 CFAP97 domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498004, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cfap97d1provided by RGD
    Official Full Name
    CFAP97 domain containing 1provided by RGD
    Primary source
    RGD:1565533
    See related
    EnsemblRapid:ENSRNOG00000036796 AllianceGenome:RGD:1565533
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565533
    Summary
    Predicted to be involved in sperm axoneme assembly. Orthologous to human CFAP97D1 (CFAP97 domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 45.5), Brain (RPKM 8.2) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cfap97d1 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (87432559..87444711)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (86933585..86944566)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (89918313..89930913)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene mesenchyme homeobox 1 Neighboring gene sclerostin Neighboring gene dual specificity phosphatase 3 Neighboring gene MAGUK p55 scaffold protein 3 Neighboring gene uncharacterized LOC134480879

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in sperm axoneme assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sperm axoneme assembly ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    sperm axonemal maintenance protein CFAP97D1
    Names
    uncharacterized protein C17orf105 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134601.2 → NP_001128073.2  sperm axonemal maintenance protein CFAP97D1

      See identical proteins and their annotated locations for NP_001128073.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      D3ZAA8
      Related
      ENSRNOP00000052063.3, ENSRNOT00000055192.5
      Conserved Domains (1) summary
      pfam13879
      Location:35 → 130
      KIAA1430; KIAA1430 homolog

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      87432559..87444711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039086640.2 → XP_038942568.1  sperm axonemal maintenance protein CFAP97D1 isoform X2

      Related
      ENSRNOP00000105399.1, ENSRNOT00000143910.1
      Conserved Domains (1) summary
      pfam13879
      Location:35 → 99
      KIAA1430; KIAA1430 homolog

    2. XM_039086642.2 → XP_038942570.1  sperm axonemal maintenance protein CFAP97D1 isoform X4

      Conserved Domains (1) summary
      pfam13879
      Location:35 → 99
      KIAA1430; KIAA1430 homolog

    3. XM_039086641.2 → XP_038942569.1  sperm axonemal maintenance protein CFAP97D1 isoform X3

      Conserved Domains (1) summary
      pfam13879
      Location:35 → 99
      KIAA1430; KIAA1430 homolog

    4. XM_006247404.4 → XP_006247466.1  sperm axonemal maintenance protein CFAP97D1 isoform X1

      See identical proteins and their annotated locations for XP_006247466.1

      UniProtKB/TrEMBL
      D3ZAA8
      Conserved Domains (1) summary
      pfam13879
      Location:35 → 130
      KIAA1430; KIAA1430 homolog

    5. XM_006247405.5 → XP_006247467.1  sperm axonemal maintenance protein CFAP97D1 isoform X1

      See identical proteins and their annotated locations for XP_006247467.1

      UniProtKB/TrEMBL
      D3ZAA8
      Conserved Domains (1) summary
      pfam13879
      Location:35 → 130
      KIAA1430; KIAA1430 homolog
    Nucleotide Protein Strain
    Heading Accession and Version

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